Util
Class FileListReader

java.lang.Object
  Util.FileListReader

public class FileListReader
extends java.lang.Object

Opens a file describing wormbase papers

Author:

davidc

Constructor Summary

FileListReader()

Method Summary

static java.lang.String	extractWbid(java.lang.String absoluteFile)
static java.util.List<TestDoc>	genList(int num, java.util.List<KnownDoc> exclude) Will return min of num and remaining papers
static java.util.List<KnownDoc>	makeKnownList() Obtains training file from Settings
static java.util.List<KnownDoc>	makeKnownList(java.lang.String source) The function that parses the training set.
static java.util.List<TestDoc>	makeTestList(java.io.File inputFile)
static java.util.List<TestDoc>	makeTestList(java.lang.String string)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FileListReader

public FileListReader()

Method Detail

makeKnownList

public static java.util.List<KnownDoc> makeKnownList()
                                              throws java.io.IOException

Obtains training file from Settings

Returns:

Throws:

java.io.IOException

makeKnownList

public static java.util.List<KnownDoc> makeKnownList(java.lang.String source)
                                              throws java.io.IOException

The function that parses the training set.

Parameters:

source -

Returns:

Throws:

java.io.IOException

genList

public static java.util.List<TestDoc> genList(int num,
                                              java.util.List<KnownDoc> exclude)

Will return min of num and remaining papers

Parameters:

num -

exclude - papers that are guaranteed to not be in the returned list

Returns:

extractWbid

public static java.lang.String extractWbid(java.lang.String absoluteFile)

makeTestList

public static java.util.List<TestDoc> makeTestList(java.lang.String string)
                                            throws java.io.IOException

Throws:

java.io.IOException

makeTestList

public static java.util.List<TestDoc> makeTestList(java.io.File inputFile)
                                            throws java.io.FileNotFoundException,
                                                   java.io.IOException

Throws:

java.io.FileNotFoundException

java.io.IOException