Uses of Class
Util.KnownDoc

Packages that use KnownDoc

benchmark	Classes that benchmark the system.
SVM	Executing SVM, and functions to test/benchmark SVM capability
Tools	Tools to use when preprocessing the XML files to more usable forms.
Util	Lots of classes that are used throughout the engine, and could possibly be used in another project.

Uses of KnownDoc in benchmark

Methods in benchmark that return types with arguments of type KnownDoc

static java.util.List<KnownDoc>

Germline.makeKnownListMergingGermline(java.lang.String source)

Method parameters in benchmark with type arguments of type KnownDoc

static double	Active.findScore(java.util.List<KnownDoc> testSet, java.util.List<KnownDoc> trainSet, java.io.PrintStream outFile)
static double	Active.findScore(java.util.List<KnownDoc> testSet, java.util.List<KnownDoc> trainSet, java.io.PrintStream outFile)

Uses of KnownDoc in SVM

Method parameters in SVM with type arguments of type KnownDoc

static void	SVMManager.checkCatResults(java.util.List<KnownDoc> knowns)
static void	SVMManager.checkCatResults(java.util.List<KnownDoc> knownsO, int cat)
static boolean	SVMManager.checkUnique(java.util.List<KnownDoc> knowns) Use this after reading in the training file to make sure a file is not present twice (a costly mistake that gives unpredictable results)
static void	BenchmarkTest.crossFoldValidation(int folds, java.util.List<KnownDoc> knowns, boolean useBoost, int boostFactor)
static void	SVMManager.dumpProblem(int cat, java.util.List<KnownDoc> knowns, java.lang.String f)
static double	BenchmarkTest.findScore(double[] precisions, double[] recalls, int idx, java.util.List<KnownDoc> testSet, java.util.List<KnownDoc> trainSet, java.io.PrintStream outFile, boolean useBoost, int boostFactor)
static double	BenchmarkTest.findScore(double[] precisions, double[] recalls, int idx, java.util.List<KnownDoc> testSet, java.util.List<KnownDoc> trainSet, java.io.PrintStream outFile, boolean useBoost, int boostFactor)
static void	SVMManager.parameterGridSearch(java.util.List<KnownDoc> knowns, int cat)
static void	BootStrapper.purifyResults(java.util.List<KnownDoc> testL) Supposedly this method will delete those entries that are incorrectly classified.

Uses of KnownDoc in Tools

Method parameters in Tools with type arguments of type KnownDoc

static void

TxtToHtmlConverter.convertKnownDocs(java.util.List<KnownDoc> docs)

Uses of KnownDoc in Util

Methods in Util that return types with arguments of type KnownDoc

static java.util.List<KnownDoc>	FileListReader.makeKnownList() Obtains training file from Settings
static java.util.List<KnownDoc>	FileListReader.makeKnownList(java.lang.String source) The function that parses the training set.

Method parameters in Util with type arguments of type KnownDoc

static java.util.List<TestDoc>

FileListReader.genList(int num, java.util.List<KnownDoc> exclude) Will return min of num and remaining papers